Browsing by Author "Iseri, Ozlem Darcansoy"

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Alleviation of Copper Induced Oxidative Damage and Genotoxicity in Tomato by Corchourus Olitorius and Urtica Pilulifera Extracts
(2014) Iseri, Ozlem Darcansoy; Korpe, Didem Aksoy; Sahin, Feride Iffet; Haberal, Mehmet; https://orcid.org/0000-0001-7308-9673; https://orcid.org/0000-0002-3462-7632; AAC-7232-2020; AAJ-8097-2021
Anti-Phytopathogenic Activity of Wild Medicinal Plants Extracts
(2017) Kocabas, Aytac; Iseri, Ozlem Darcansoy; Unlu, Ummuhan; Sahin, Feride Iffet; 0000-0001-7622-1932; 0000-0001-7308-9673; F-5933-2013; AAC-7232-2020
beta-Adrenoreceptor antagonists reduce cancer cell proliferation, invasion, and migration
(2014) Iseri, Ozlem Darcansoy; Sahin, Feride Iffet; Terzi, Yunus Kasim; Yurtcu, Erkan; Erdem, S. Remzi; Sarialioglu, Faik; 25026350
Context: Propranolol, atenolol, and ICI118,551 are non-selective beta-adrenergic receptor (AR), beta(1)-AR, and beta(2)-AR antagonists, respectively. Objective: We investigated the efficacy of propranolol, atenolol, and ICI118,551 on proliferation, migration, and invasion of non-stimulated breast (MCF7), colon (HT-29), and hepatocellular (HepG2) cancer cells. Materials and methods: beta-AR expression profiling of cells was performed by real time PCR. Cell proliferation was determined by MTT. Boyden chamber and scratch assays were performed to evaluate invasion and migration. Results and discussion: All cell lines expressed beta-ARs. ICI118,551 was the most cytotoxic, whereas atenolol was the least effective beta-AR antagonist for 24, 48, and 72 h. Cell invasion was inhibited by ICI118,551 (45, 46, and 50% for MCF7, HT29, and HepG2, respectively) and propranolol (72, 65, and 90% for MCF7, HT29, and HepG2, respectively). Propranolol, atenolol, and ICI118,551 reduced migration of MCF7, HT-29, and HepG2 cells to varying extents depending on the application concentration and duration. Propranolol and atenolol reduced migration of MCF7 and HT-29 in a concentration-dependent manner, whereas migration of these cells decreased after 48 and 72 h of ICI118,551 applications. Conclusion: Beta(2)-AR antagonist seemed to be the most cytotoxic beta-blocker on non-stimulated cancer cells. Propranolol and ICI118,551 were more effective than atenolol in inhibiting invasion and migration of non-stimulated MCF7 and HT-29 cells; ICI118,551 being the most potent. Concordantly, beta(2)-selective blockage seemed to be more effective for non-stimulated cells. Effect of the selective beta-AR antagonists showed variation depending on the concentration, incubation time, and histological origin of cells.
Biosynthesis of Metallic Nanoparticles: A Comparative Optimization Study for Plant Leaf Extracts and Their Biological Assays
(2016) Korpe, Didem Aksoy; Iseri, Ozlem Darcansoy; Duman, Memed; Denkbas, Emir Baki; Sahin, Feride Iffet; Haberal, Mehmet; 0000-0002-2616-6733; 0000-0001-7308-9673; 0000-0002-3462-7632; B-9957-2014; AAC-7232-2020; AAJ-8097-2021
Corchorus olitorius L. (Jute) leaf and seed extracts exerted high antibacterial activity against food and plant pathogenic bacteria
(2022) Iseri, Ozlem Darcansoy; Korpe, Didem Aksoy; Sahin, Feride Iffet; Cabi, Evren; Haberal, Mehmet; 0000-0002-3462-7632; AAJ-8097-2021
Aim of this study was to comparatively evaluate antibacterial activities of methanol (MetOH), acetone (Ace), petroleum ether (PE) and aqueous (dw) leaf (L), root (R), and seed (S) extracts of Corchorus olitorius L. on both food- and plant-borne pathogens, with DPPH radical scavenging activities (DRSA), and quantitative and qualitative constituent analysis. Leaf PE has the highest strain susceptibility on both food- and plant-borne pathogens. Clavibacter michiganensis, Pseudomonas tomato, and Erwinia caratovora were susceptible to nearly all the leaf and seed extracts. Very low minimum inhibitory concentration (8-128 mL(-1)) and minimum bactericidal concentration (32-2048 mu g mL(-1)) were determined for both leaf and seed extracts against C. michiganensis. Total phenolic contents were correlated to DRSA. The phenolic compounds tested were higher in the leaf MetOH, cholorogenic acid being the most abundant one. Palmitic acid was determined in leaf PE and seed PE extracts. Results presented here demonstrate high antibacterial activity of C. olitorius leaf seed extracts against phytopathogens for the first time, and provide the most comprehensive data on the antibacterial activity screening against food-borne pathogens. Considering limitations in plant disease control, antibacterial activities of these extracts would be important in plant disease control.
Effects of Silymarin and Silymarin-Doxorubicin Applications on Telomerase Activity of Human Hepatocellular Carcinoma Cell Line HepG2
(2015) Yurtcu, Erkan; Iseri, Ozlem Darcansoy; Sahin, Feride Iffet; 0000-0001-7308-9673; 0000-0003-4930-8164; 26011349; AAC-7232-2020; AAA-2998-2021
Purpose: Hepatocellular carcinoma (HCC) is resistant to conventional chemotherapeutics such as doxorubicin. Milk thistle extract, or its active constituent silymarin has been used by cancer patients as an alternative and complementary agent. Telomerase activation is one of the initial events of HCC. In this study, we applied doxorubicin and silymarin for 72 hrs in order to test individual and combined effect of the agents on telomerase activity. Methods: The effects of doxorubicin, silymarin, and their combination on the proliferation of HepG2 cell line were tested by MTT assay, and Checkerboard micro plate method was applied to define the nature of doxorubicin and silymarin interactions on the cells. Lipid peroxidations were assessed by thiobarbituric acid reactive substance (TBARS) level. Telomerase activity was determined according to the telomeric repeat amplification protocol (TRAP). Untreated cells were used as control group. Results: Doxorubicin-silymarin combination had indifferent antiproliferative effects on HepG2 cells. Telomerase activity of the cells incubated with IC50 of doxorubicin and silymarin decreased to 72% (p<0.05). IC50 combinations of doxorubicin and silymarin caused 70% (p<0.05) reduction. All treatments except for the 1/2IC(50) of silymarin caused significant increase in lipid peroxidation levels when compared to controls. TBARS levels did not significantly increase when doxorubicin and silymarin were applied in combination, which is in concordance with the indifferent drug interaction. Conclusion: IC50 of both doxorubicin and silymarin alone and in combination inhibited telomerase activity. Mechanism of inhibition may be elucidated by further molecular studies.
Epigallocatechin 3-gallate applications on HT-29 and MCF-7 cell lines and evaluation of tumor suppressor gene methylation
(2015) Terzi, Yunus Kasim; Kaya, Ozge Ozer; Iseri, Ozlem Darcansoy; Celik, Zerrin; Sahin, Feride Iffet
Epigallocatechin 3-gallate (EGCG) is an antitumor molecule and shows this activity by binding to the active center of a methyltransferase enzyme (DNMT1). The methylation of DNA sequences of tumor suppressor and DNA repair genes is observed in different stages of carcinogenesis. In this study, we analyzed the effect of EGCG on the methylation status of 25 tumor suppressor genes in cancer cell lines HT-29 and MCF-7. HT-29 and MCF-7 cells were incubated with 10 mu M, 20 mu M, and 50 mu M and 1 mu M, 5 mu M, and 10 mu M EGCG for 48 h, respectively. We found promoter hypermethylation of (1) CDH13, GATA5, and RAR beta genes in MCF-7 cell line and (2) RAR beta, ESR1, PAX6, WT1, CADM1, CHFR, CDH13, and GATA5 genes in HT-29 cell line. However, (3) after EGCG application, no changes in methylation status were detected in our samples. Our results suggest that methylation status of tumor suppressor genes did not change with different EGCG doses.
Grafting Tomato Onto Tobacco Rootstocks Is A Practical and Feasible Application for Higher Growth and Leafing in Different Tobacco-Tomato Unions
(2016) Haberal, Mehmet; Korpe, Didem Aksoy; Iseri, Ozlem Darcansoy; Sahin, Feride Iffet; 0000-0002-3462-7632; 0000-0001-7308-9673; AAJ-8097-2021; AAC-7232-2020
A previously developed grafting strategy was applied to graft a commercial cultivated variety of tomato (Solanum lycopersicum L. H-2274) onto Nicotiana rustica L. (cv. Hasankeyf) and Nicotiana tabacum L. (cv. Samsun) rootstocks. Higher growth and leafing, and earlier flower onset were found in grafted than in non-grafted and self-grafted plants. Significant 22.7 and 34.3% increases in fruit yield were obtained with Samsun and Hasankeyf rootstocks, respectively. Leaves of tobacco-grafted plants had significantly elevated levels of nicotine, and highest leaf nicotine levels were measured at 90days after transplantation (DAT). Leaves from upper sampling levels of plants had significantly less nicotine independent of the sampling DAT. Fruits of all tobacco-grafted plants had significantly higher amounts of nicotine than non-grafted scions. Nicotine levels were higher in fruits sampled from lower parts of the plants for different harvest DAT and rootstocks. Increases in leaf nicotine concentration of tobacco-grafted plants were higher when compared with that of fruit. Grafting tomato onto tobacco rootstocks is a practical and feasible application for different tobacco-tomato unions.
High salt induced oxidative damage and antioxidant response in tomato grafted on tobacco
(2015) Iseri, Ozlem Darcansoy; Korpe, Didem Aksoy; Sahin, Feride Iffet; Haberal, Mehmet
One of the major limitations on agricultural development in many countries is the high salinity of the groundwater used in irrigation. Grafted plants may exhibit phenotypic variations from scion and rootstock plants in terms of abiotic stress tolerance, and be a method for improvement of tolerance in agricultural practices. The aim of the present study was to investigate response of Solanum lycopersicum L. ('Elazig') grafted on Nicotiana tabacum L. ('Samsun') and Nicotiana rustica L. ('Hasankeyf'), namely "Tomacco" plant (patent nr TR-2008-05391-B), to 10-d high NaCl irrigation. Physical development, chlorophyll a and b, total chlorophyll, total carotenoid, and anthocyanin levels were evaluated. Proline, lipid peroxidation, and electrolyte leakage levels were assayed in roots and leaves together with ascorbate peroxidase (APX) and catalase (CAT) activities. Considering alterations in chlorophyll contents, proline, malondialdehyde (MDA), and conductivity levels, and antioxidant enzyme activity levels scion and self-grafted plants seem to be more affected by salt treatments than tobacco and rootstock grafted plants. Tobacco roots seem to have better adaptive responses against salt stress in comparison to tomato as supported by changes in proline, APX, and CAT levels. Self-grafting experiments further supported grafting tomato onto tobacco rootstocks enhanced salt tolerance and adaptive response of scions and these changes seem to be dependent on rootstock rather than graft-induced changes. In conclusion, we demonstrated that previously defined graft unions of tomato on tobacco, which have increased fruit yield, had also enhanced tolerance to high salt stress and a promising technique for the cultivation of more salt tolerant varieties.
Hydrogen Peroxide Acclimation Enhanced Antioxidant Response of Lycopersicon Esculentum Mill. Under Prolonged Cold Stress: A Field Study
(2016) Iseri, Ozlem Darcansoy; Sahin, Feride Iffet; Korpe, Didem Aksoy; Haberal, Mehmet; 0000-0001-7308-9673; 0000-0002-3462-7632; AAC-7232-2020; AAJ-8097-2021
Hydrogen Peroxide Pretreatment of Roots Protected Tomato Cells Against Copper Induced Oxidative Damage and Genotoxicity
(2017) Iseri, Ozlem Darcansoy; Sahin, Feride Iffet; Haberal, Mehmet; 0000-0001-7308-9673; 0000-0002-3462-7632; AAC-7232-2020; AAJ-8097-2021
Image Analysis For Single Cell Gel Electrophoresis
(2017) Mese, Alev Kakac; Erdamar, Aykut; Iseri, Ozlem Darcansoy; 0000-0001-8588-480X; AAA-6844-2019
Detection of dioxyribonucleic acid (DNA) damage is very crucial in various areas of life sciences and in the clinical diagnosis of some pathophysiologies. Single cell gel electrophoresis, also called Comet Assay, is a reliable and easily applicable method to measure/detect level of DNA damage which is an indicator of an genotoxic and cytotoxic effect on living organisms caused by chemical and phsyical activity. The method is generally based on the fact that the DNA in the nucleus isolated from living tissues is placed in a thin agarose gel and run on an electrophoretic medium. DNA images obtained with the Comet protocol can be evaluated visually as well as can be analyzed using various software today. With such software, objective results can be obtained in a short period of time and without adhering to the researcher's experience. In this study, Comet analysis images obtained from HepG2 (ATCC HB-8065) hepatocellular carcinoma liver cancer cells were used. Calculation of measurement results of these user-selected images and presenting parametric data to the user are intended.
Metagenomics Next Generation Sequencing (mNGS): An Exciting Tool for Early and Accurate Diagnostic of Fungal Pathogens in Plants
(2022) Gokdemir, Fatma Seyma; Iseri, Ozlem Darcansoy; Sharma, Abhishek; Achar, Premila N.; Eyidogan, Fusun; https://orcid.org/0000-0003-2951-848X; 36422016
Crop output is directly impacted by infections, with fungi as the major plant pathogens, making accurate diagnosis of these threats crucial. Developing technology and multidisciplinary approaches are turning to genomic analyses in addition to traditional culture methods in diagnostics of fungal plant pathogens. The metagenomic next-generation sequencing (mNGS) method is preferred for genotyping identification of organisms, identification at the species level, illumination of metabolic pathways, and determination of microbiota. Moreover, the data obtained so far show that this new approach is promising as an emerging new trend in fungal disease detection. Another approach covered by mNGS technologies, known as metabarcoding, enables use of specific markers specific to a genetic region and allows for genotypic identification by facilitating the sequencing of certain regions. Although the core concept of mNGS remains constant across applications, the specific sequencing methods and bioinformatics tools used to analyze the data differ. In this review, we focus on how mNGS technology, including metabarcoding, is applied for detecting fungal pathogens and its promising developments for the future.
Sodium Chloride Priming Improves Salinity Response of Tomato at Seedling Stage
(2014) Iseri, Ozlem Darcansoy; Sahin, Feride Iffet; Haberal, Mehmet; https://orcid.org/0000-0001-7308-9673; https://orcid.org/0000-0002-3462-7632; AAC-7232-2020; AAJ-8097-2021
We aimed to investigate whether sodium chloride seed priming and irrigation at seedling stage enhance response of 5-leaf stage tomato plants (Lycopersium esculentum Mill.) to high salt stress. Three experimental groups were as; non-primed seeds, seeds primed with 0.05M sodium chloride (NaCl), and seeds primed and irrigated with 0.05M NaCl starting from sowing to salt stress application. Sodium chloride solutions (0.1M, 0.2M, 0.4M, and 0.6M) were added to cups under pots in every 2days for 10days to treatment groups. Control groups were irrigated with distilled water at the same time intervals. At least two experimental setups contained at least four plants, and two samplings of leaf and root tissues were performed for analysis of each plant to evaluate changes in pigment and proline contents, lipid peroxidation and electrolyte leakage levels, and ascorbate peroxidase and catalase activity. Priming reduced mean germination time, and increased final germination percentage together with energy of germination. Increased root and hypocotyl lengths as well as increases in fresh weights supported enhanced seedling vigor. Considering growth and stress parameters such as chlorophyll content, chlorophyll to carotenoid ratios, and lipid peroxidation and electrolyte leakage were less affected in primed plants. Moreover, improvement of the accumulation of osmoregulating defense molecules, such as proline and anthocyanin, and of the inductions of the antioxidative enzyme system points out to higher adaptive response of these plants against deleterious effects of salt.